Preprocessing Configuration Library
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This document provides a curated collection of configuration files for data preprocessing in bioinformatics. The configurations are organized by analytical task, such as Cell Type Annotation, Clustering, and Joint Embedding. Each file details a recommended workflow for a specific algorithm, designed to ensure reproducibility and serve as a best-practice starting point for analysis.

.. toctree::
   :maxdepth: 1
   :caption: Tasks

   cluster/index
   celltype_annotation/index
   imputation/index
   joint_embedding/index
   spatial_domain/index
   celltype_deconvolution/index